A/R Owner Direct Paid Invoice

In Accounts Receivable - Currently we have a subcontractor invoice included in our monthly invoice to the general contractor - the invoice was then paid directly by the g.c. - how do we handle this in A/R.  I have deleted the invoice from A/P as we will never pay it.  The invoice total though needs to be included in our billed to date and paid to date totals because it is part of our contract amount.  The amount we will receive by check from the g.c. will be lower than what was invoiced by the amount of the subcontractor invoice.